NeuroBlocks – Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects

PROJECT TITLE :

NeuroBlocks – Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects

ABSTRACT:

In the sphere of connectomics, neuroscientists acquire electron microscopy volumes at nanometer resolution in order to reconstruct an in depth wiring diagram of the neurons within the brain. The resulting image volumes, that usually are hundreds of terabytes in size, need to be segmented to identify cell boundaries, synapses, and necessary cell organelles. But, the segmentation process of a single volume is terribly complex, time-intensive, and sometimes performed using a various set of tools and several users. To tackle the associated challenges, this paper presents NeuroBlocks, that is a novel visualization system for tracking the state, progress, and evolution of very massive volumetric segmentation information in neuroscience. NeuroBlocks is a multi-user internet-based mostly application that seamlessly integrates the varied set of tools that neuroscientists currently use for manual and semi-automatic segmentation, proofreading, visualization, and analysis. NeuroBlocks is the primary system that integrates this heterogeneous tool set, providing crucial support for the management, provenance, accountability, and auditing of huge-scale segmentations. We have a tendency to describe the planning of NeuroBlocks, beginning with an analysis of the domain-specific tasks, their inherent challenges, and our subsequent task abstraction and visual illustration. We have a tendency to demonstrate the utility of our style primarily based on 2 case studies that target completely different user roles and their respective necessities for performing and tracking the progress of segmentation and proofreading during a massive real-world connectomics project.

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